Dan Lomas put his side ahead from the penalty spot before Smith doubled City’s lead before the break.
Ryan Harkin pulled a goal back for United before Smith secured City’s passage controlling the ball before firing home.
They face Hellenic Premier leaders Worcester City in the next round, who left it late to secure a 2-0 victory at Boston Town.
Dylan Hart opened the scoring in the 90th minute before Kyle Belmonte sealed their passage.
Great Wakering Rovers reached the fourth round for their first time in 22 years after a 3-0 win over Fakenham Town.
Callum Boylan, Harry Talbot, and Aiden Brown all scored as the Essex Senior League side progressed.
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