The Irish URC champions looked to be coasting to a big win but Quins crossed for two tries in the closing stages – one a superb effort from Roma Zheng from 25 metres – as the Premiership contenders showing their attacking prowess.
With both sides selecting a mix of senior and academy players, The Stoop crowd was treated to an entertaining night of up tempo rugby.
Munster took the lead on eight minutes when former Sale full-back Mike Haley finished off a series of phases to score untouched. Fly-half Joey Carbery added the extras.
Munster captain Alex Kendellen charging off the back of the lineout to crash over the Quins line for their second just past the quarter hour mark.
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