Israel's offensive has also wounded 92,401 people and displaced more than 85% of the population from their homes, the ministry in Hamas-run Gaza said.
It does not distinguish between civilians and militants in its toll.
The announcement came during another push from international mediators to broker a ceasefire in the war, now in its 11th month.
The conflict began on October 7 after Hamas-led militants attacked southern Israel, killing some 1,200 people most of them civilians and dragging roughly 250 hostages to Gaza.
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